办公地点:数学科学系理科楼 A-203



1970.09 - 1973.07                 



1973.09 - 1974.07 

美国纽约州立大学石溪分校 数学系  


1974.08 - 1976.07 

美国纽约州立大学石溪分校 数学系  




2011.06 - 至今                                  



2005.09 - 2011.05                       



2002.09 - 2011.05                            



1989.08 - 1990.07                             



1984.08 - 2005.08  



1984.08 - 1985.07                                      



1981.09 - 1982.08                            



1980.08 - 1984.07  



1977.09 - 1980.08                                



1976.08 - 1977.08                            





1992.01 - 至今

Journal of Algebraic Geometry


2001.01 - 至今

Communications in Information and Systems




Ø  主要研究方向:


Ø  其他研究方向:




 [1]        国家自然科学基金:复解析簇的局部和整体问题研究,项目编号:11531007,执行年限:2016.01-2020.12,总经费:276万,项目负责人

 [2]        国家自然科学基金:关于有限维非线性滤波分类和多项式滤波问题的研究,项目编号:11471184,执行年限:2015.01-2018.12,总经费:80万,项目负责人

 [3]        教育部:海洋微生物基因组分类与进化的几何算法研究,执行年限:2014.01-2016.12,总经费:70万,项目负责人已结题。

 [4]        国家自然科学基金:病毒基因空间几何算法研究和对新病毒威胁快速探测及预警,项目编号:31271408执行年限:2013.01-2016.12,总经费:60万,项目负责人,已结题。



1.      20131月,获美国数学学会Fellow (Fellow of the American Mathematical Society)

2.      20055月,获美国伊利诺伊大学杰出教授 (UIC Distinguished Professor)

3.      20031月,获电气电子工程师学会Fellow (IEEE Fellow)

4.      20009月,获约翰.西蒙.古根海姆奖 (John Simon Guggenheim Fellowship)

5.      19804月,获艾尔弗雷德. P. 斯隆奖 (Alfred P. Sloan Fellowship)





1.       An information-based network approach for protein classification (with Xiaogeng Wan and Xin Zhao), (to appear), PloS ONE, 2017.

2.       4d N=2 SCFT and singularity theory Part II: Complete intersection (with Bingyi Chen, Dan Xie, Shing-Tung Yau and Huaiqing Zuo), (to appear), Advances in Theoretical and Mathematical Physics, 2017.

3.       Direct method for Yau filtering system with nonlinear observations (with Ji Shi and Zhiyu Yang), (to appear), International Journal of Control, 2017.

4.       Zika and flaviviruses phylogeny based on the alignment-free natural vector method (with Yongkun Li, Lily He and Rong Lucy He), (to appear), DNA and Cell Biology, 2017.

5.       Direct method for time-varying nonlinear filtering problems (with Xiuqiong Chen and Xue Luo), (to appear), IEEE Transactions on Aerospace and Electronic Systems, 2017.

6.       Thom-Sebastiani properties of Kohn-Rossi cohomology of compact connected strongly pseudoconvex CR manifolds (with Huaiqing Zuo), (to appear), SCIENCE CHINA Mathematics, 2017.

7.       Recent results on rigidity of CR morphisms between compact strongly pseudoconvex CR manifolds (with Huaiqing Zuo), (to appear), Proceedings of ICCM2013, 2017.

8.       A Sharp upper estimate conjecture for the Yau number of weighted homogeneous isolated hypersurface singularity (with HUAI QING ZUO), Pure and Applied Mathematics Quarterly, Vol. 12, No. 1 (2016), 165-181.

9.       Novel Suboptimal Filter via Higher Order Central Moments (with Xue Luo, Yang Jiao, and Wen-Lin Chiou), IEEE Transactions on Aerospace and Electronic Systems, Vol. 52, No. 4 (2016), 2030-2038.

10.   Numerical encoding of DNA sequences by Chaos Game Representation with application in similarity comparison (with Tung Hoang and Changchuan Yin), Genomics, Vol. 108 (2016), 134-142.

11.   Virus classification in 60-dimensional protein space (with Yongkun Li, Kun Tian, Changchuan Yin and Rong Lucy He), Molecular Phylogenetics and Evolution, Vol. 99 (2016), 53-62.

12.   A New Method for Studying the Evolutionary Origin of the SAR11 Clade Marine Bacteria (with Xin Zhao, Xiaogeng Wan and Rong Lucy He), Molecular Phylogenetics and Evolution,Vol. 98 (2016), 271-279.

13.   Derivations of the moduli algebras of weighted homogeneous hypersurface singularities (with Huaiqing Zuo), Journal of Algebra, Vol. 457 (2016), 18-25.

14.   A sharp estimate of positive integral points in 6-dimensional polyhedra and a sharp estimate of smooth numbers (with Andrew Liang and Huaiqing Zuo), SCIENCE CHINA Mathematics, Vol. 59, No. 3 (2016), 425-444.

15.   On the polynomial sharp upper estimate conjecture in 7-dimensional simplex (with Beihui Yuan and Huaiqing Zuo), Journal of Number Theory, Vol. 160 (2016), 254-286.

16.   On higher dimensional complex Plateau problem (with Rong Du and Yun Gao), Mathematische Zeitschrift, Vol. 282(2016), 389-403.

17.   Interplay between CR Geometry and Algebraic Geometry (with Huaiqing Zuo), Complex Geometry and Dynamics – Proceedings of the Abel Symposium 2013, NTNU, Trondheim, Norway, July 2-5, 2013, Vol. 10(2015), 227-258.

18.   On the quenching behavior of the mems with fringing field (with Xue Luo), Quarterly of Applied Mathematics, Vol. 73, No. 4 (2015), 629-659.

19.   Some Finite Dimensional Filters derived from the Structure Theorem for Five-dimensional Estimation Algebras (with Wen-Lin Chiou and Shaopu Lin), Asian Journal of Math., Vol. 19, No. 5 (2015), 793-810.

20.   Topological Classification of Simplest Gorenstein Non-complete Intersection Singularities of Dimension 2 (with Mingyi Zhang and Huaiqing Zuo), Asian Journal of Mathematics, Vol. 19, No. 4 (2015), 651-792.

21.   A Novel Suboptimal Method for Solving Polynomial Filtering Problems (with Xue Luo, Yang Jiao and Wen-Lin Chiou), Automatica, Vol. 62 (2015), 26-31.

22.   Two dimensional Yau-Hausdorff distance with applications on comparison of DNA and protein sequences (with Kun Tian, Xiaoqian Yang, Qin Kong, Changchuan Yin and Rong L. He), PLoS ONE, 2015, DOI:10.1371/journal.pone.0136577.

23.   Ebolaviruses Classification Based on Natural Vectors (with Hui Zheng, Changchuan Yin, Tung Hoang, Rong Lucy He and Jie Yang), DNA and Cell Biology, Vol. 34, No. 6 (2015), 1-11.

24.   An improved model for whole genome phylogenetic analysis by Fourier transform (with Changchuan Yin), Journal of Theoretical Biology, Vol. 382 (2015), 99-110.

25.   Time-dependent Hermite-Galerkin spectral method and its applications (with Xue Luo and Shing Tung Yau), Applied Mathematics and Computation, Vol. 264 (2015), 378-391.

26.   A new method to cluster DNA sequences using Fourier power spectrum (with Tung Hoang, Changchuan Yin, Hui Zheng, Chenglong Yu and Rong Lucy He), Journal of Theoretical Biology, Vol. 372 (2015), 135-145.

27.   Plurigenera of compact connected strongly pseudoconvex CR manifolds (with Ke-Pao Lin and Huaiqing Zuo), Science China Mathematics, Vol. 58, No. 3 (2015), 525-530.

28.   Distinguishing Proteins From Arbitrary Amino Acid Sequences (with Wei-Guang Mao, Max Benson, and Rong Lucy He), Scientific Reports,Vol. 5 (2015), 1-8.

29.   Complete characterization of isolated homogeneous hypersurface singularities (with Huaiqing Zuo), Pacific Journal of Mathematics, Vol. 273, No. 1 (2015), 213-224.

30.   On classification of toric surface codes of low dimension (with Xue Luo, Mingyi Zhang and Huaiqing Zuo), Finite Fields and Their Applications, Vol. 33 (2015), 90-102.

31.   A sharp polynomial estimate of positive integral points in a 4-dimensional tetrahedron and a sharp estimate of the Dickman-de Bruijn function (with Xue luo and Huaiqing Zuo), Mathematische Nachrichten, Vol. 288, No. 1 (2015), 61-75.

32.   On a number-theoretic conjecture on positive integral points in a 5-dimensional tetrahedron and a sharp estimate of the Dickman-De Bruijn function (with Ke-Pao Lin, Xue Luo, and Huaiqing Zuo), Journal of the European Mathematical Society, Vol. 16 (2014), 1937-1966.

33.   Global comparison of multiple-segmented viruses in 12-dimensional Genome space (with Hsin-Hsiung Huang, Chenglong Yu, Hui Zheng, Troy Hernandez, Shek-Chung Yau, Rong Lucy He, and Jie Yang), Molecular Phylogenetics and Evolution, Vol. 81 (2014), 29-36.

34.   K-mer sparse matrix model for genetic sequence and its applications in sequence comparison (with Jia Wen and YuYan Zhang), Journal of Theoretical Biology, Vol. 363 (2014), 145-150.

35.   A measure of DNA sequence similarity by Fourier Transform with applications on hierarchical clustering (with Changchuan Yin, and Ying Chen), Journal of Theoretical Biology, Vol. 359 (2014), 18-28.

36.   DFA7, A New Method to Distinguish between Intron-containing and Intronless Genes (with Chenglong Yu, Mo Deng, Lu Zheng, Rong Lucy He, and Jie Yang), PLoS ONE, Vol. 9, No. 7 (2014), 1-10.

37.   K-mer natural vector and its application to the phylogenetic analysis of genetic sequences (with Wen Jia, Raymond H.F. Chan, Shek-Chung Yau, Rong L. He), Gene, Vol. 546, No. 1 (2014), 25-34.

38.   Viral genome phylogeny based on Lempel-Ziv complexity and Hausdorff distance (with Chenglong Yu, Rong Lucy He), Journal of Theoretical Biology, Vol. 348 (2014), 12-20.

39.   On variance of exponents for isolated surface singularities with modality ≤ 2 (with Huaiqing Zuo), Science China Mathematics, Vol. 57, No. 1 (2014), 31-41.

40.   Hermite Spectral Method with Hyperbolic Cross Approximations to High-dimensional Parabolic PDEs (with Xue Luo), SIAM J. Numer. Anal., Vol. 51, No. 6 (2013), 3186-3212.

41.   Hermite spectral method to 1-D forward Kolmogorov equation and its application to nonlinear filtering problems (with Xue Luo), IEEE Transactions on Automatic Control, Vol. 58, No. 10 (2013), 2495-2507.

42.   Several splitting criteria for vector bundles and reflexive sheaves (with Fei Ye), Pacific Journal of Mathematics, Vol. 266, No. 2 (2013), 449-456.

43.   Complete real time solution of the general nonlinear filtering problem without memory (with Xue Luo), IEEE Transactions on Automatic Control, Vol. 58, No. 10 (2013), 2563-2578.

44.   Protein sequence comparison based on K-string dictionary (with Chenglong Yu and Rong L. He), Gene, Vol. 529 (2013), 250-256.

45.   Nonconstant CR morphisms between compact strongly pseudoconvex CR manifolds and étale convering between resolutions of isolated singularities (with Yu-Chao Tu and Huaiqing Zuo), J. Differential Geometry, Vol. 95 (2013), 337-354.

46.   Denoising the 3-Base Periodicity Walks of DNA Sequences in Gene Finding (with Changchuan Yin and Dongchul Yoo), Journal of Medical and Bioengineering, Vol. 2, No. 2 (2013), 80-83.

47.   Real Time Classification of Viruses in 12 Dimensions (with Chenglong Yu, Troy Hernandez, Hui Zheng, Shek-Chung Yau, Hsin-Hsiung Huang, Rong Lucy He, Jie Yang), PLoS One, Vol. 8, No. 5 (2013), 1-10.

48.   Characterization of isolated complete intersection singularities with C*-action of dimension n≥2 by means of geometric genus and irregularity (with Huaiqing Zuo), Communications in Analysis and Geometry, Vol. 21, No. 3 (2013), 509-526.

49.   Protein space: A natural method for realizing the nature of protein universe (with Chenglong Yu, Mo Deng, Shiu-Yuen Cheng, Shek-Chung Yau, Rong L. He), Journal of Theoretical Biology, Vol. 318 (2013), 197-204.

50.   Sharp polynomial estimate of integral points in right-angled simplices (with Linda Zhao), Journal of Number Theory, Vol. 133, No. 2 (2013), 398-425.

51.   Mitter conjecture and structure theorem for six-dimensional estimation algebras (with Yang Jiao and Wen-Lin Chiou), International Journal of Control, Vol. 86, No. 1 (2013), 146-158.

52.   Decentralized detection in ad hoc sensor networks with low data rate inter sensor communication (with Lu Zheng, Yingwei Yao, Mo Deng), IEEE Transactions on Information Theory, Vol. 58, No. 5 (2012), 3215-3224.

53.   A Novel Algorithm to Solve the Robust DMZ Equation in Real Time (with Xue Luo), 51st IEEE Conference on Decision and Control, Maui, Hawaii, Dec. 10-13, (2012), 606-611.

54.   Lower estimate of milnor number and characterization of isolated homogeneous hypersurface singularities (with Huaiqing Zuo), Pacific J. math., Vol. 260, No. 1 (2012), 245-255.

55.   Kohn-Rossi cohomology and its application to the complex plateau problem, III, (with Rong Du), J. Differential Geometry, Vol. 90 (2012), 251-266.

56.   Codes from infinitely near points (with Bruce M. Bennett and Hing Sun Luk), Asian J. Mathematics, Vol. 16, No. 1 (2012), 89-101.

57.   New invariants for complex manifolds, singularities, and CR manifolds with applications (with Rong Du), Proceeding of ICCM 2010, AMS/IP Studies in Advanced Mathematics, Vol. 51 (2012), 431-445.

58.   New invariants for complex manifolds and isolated singularities (with Rong Du and Hing Sun Luk), Communications in Analysis and Geometry, Vol. 19, No. 5 (2011), 991-1021.

59.   Coordinate-free characterization of homogeneous polynomials with isolated singularities (with Irene Chen, Ke-Pao Lin, and Huaiqing Zuo), Communications in analysis and geometry, Vol. 19, No. 4 (2011), 661-704.

60.   Protein map: An alignment-free sequence comparison method based on various properties of amino acids (with Chenglong Yu, ShiuYuen Cheng, Rong L. He), Gene, Vol. 486 (2011), 110-118.

61.   A novel clustering method via nucleotide-based Fourier power spectrum analysis (with Bo Zhao and Victor Duan), Journal of Theoretical Biology, Vol. 279 (2011), 83-89.

62.   A new distribution vector and its application in genome clustering (with Bo Zhao and Rong He), Molecular Phylogenetics and Evolution, Vol. 59 (2011), 438-443.

63.   A Novel Method of Characterizing Genetic Sequences: genome space with biological distance and applications (with Mo Deng, Chenglong Yu, Qian Liang, Rong L. He), PLoS One, Vol. 6, Issue 3, e17293, March 2011, 1-9.



20116-至今,已指导本科毕业生17人,其中5人的毕业论文被国际SCI期刊录取,包括2014年发表在《Scientific Reports》的一篇论文


Ø  指导的本科生(2011年至今)                                                        

1.         2012年,田昆,杨智宇,张鸣一(论文发表在《Asian Journal of Mathematics》)。

2.         2013年,孔琴,杨晓茜,陈颖(论文发表在《Journal of Theoretical Biology),王昊。

3.         2014年,毛伟光(SCI论文发表在《Scientific Reports》),贾酥,陈秀琼。

4.         2015年,董晟成,陈楚,赵鑫(论文发表在《Molecular Phylogenetics and Evolution)。

5.         2016年,汪嘉伟,张宇宁,诸子越,陈炳仪(论文发表在《Advances in Theoretical and Mathematical Physics》)。


Ø  指导的硕士研究生(2011年至今)                                           

1.         2011.09-2014.07,袁北彗,SCI论文发表在《Journal of Number Theory

2.         2013.09-2015.07,张鸣一,SCI论文发表在《Finite Fields and Their Applications

3.         2013.09-2016.07,时  骥(硕转博)

4.         2012.09-2017.01,杨智宇

5.         2015.09-至今,董文慧


Ø  指导的博士研究生(2011年至今)                                           

1.         2012.09-2017.07,田昆,已发表2SCI论文:《PLoS ONE》(第一作者);《Molecular Phylogenetics and Evolution》(第二作者)

2.         2014.09-至今,陈秀琼,已发表1SCI论文:《IEEE Transactions on Aerospace and Electronic Systems》(第一作者)

3.         2014.09-2017.07,李永坤,已发表2SCI论文:《Molecular Phylogenetics and Evolution》(第一作者);《DNA and Cell Biology》(第一作者)

4.         2015.09-至今,赵 

5.         2015.09-至今,董 

6.         2015.09-至今,Naveed Hussain

7.         2016.09-至今,陈炳仪

8.         2016.09-至今,何黎黎,已发表1SCI论文:《DNA and Cell Biology》(第二作者)

9.         2016.09-至今,时  骥,已发表1SCI论文:《International Journal of Control》(第一作者)


Ø  指导的博士后(在站)

1.         2015.04-至今,万晓耕

2.         2016.07-至今,孟宪奎


Ø  指导的博士研究生(已毕业)                                           

1.         俞勇 (1988)

2.         Craig Seeley (1988)

3.         Yi-Jing Xu (1990)

4.         邱文齡 (1991)

5.         梁志华 (1993)

6.         Tan Jiang (1993)

7.         Li-Xing Jia (1994)

8.         陈杰 (1994)

9.         Amid Rasoulian (1995)

10.     Hon-Wing Cheng (1996)

11.     张庆龙 (1996)

12.     Guo-Qing Hu (1997)

13.     Zhi-Gang Liang (1998)

14.     林克葆 (1999)

15.     Xi Wu (2000)

16.     Zhe Li (2002)

17.     王学军 (2002)

18.     Shao-Bo Wang (2002)

19.     Junfeng Ding (2005)

20.     殷长传 (2005)

21.     Libin iu (2005)

22.     Dongchul Yoo (2005)

23.     Jiuhong Tang (2005)

24.     Dongmin Cai (2006)

25.     Ling Zhou (2007)

26.     Peng He (2007)

27.     Chaoxiao Lu (2008)

28.     杜荣 (2009)

29.     藏卫田 (2009)

30.     梁谦 (2010)

31.     赵波 (2010)

32.     于成龙 (2010)

33.     邓默 (2011)

34.     叶飞 (2011)

35.     Eb Armah (2011)

36.     焦洋 (2012)

37.     左怀青 (2012)

38.     Troy Antonio Hernandez (co-directed with Jie Yang) (2013)

39.     罗雪 (2013)

40.     Hsin-Hsiung Bill Huang (co-directed with Jie Yang) (2014)

41.     郑晖 (2015)